MANIFEST.in
Makefile.in
aksetup_helper.py
configure.py
distribute_setup.py
index.html
setup.cfg
setup.py
C++/Jamfile.v2
C++/module_network.cpp
C++/project-root.jam
C++/myrrh/Jamfile.v2
C++/myrrh/myrrh.vcproj
C++/myrrh/project-root.jam
C++/myrrh/pyitl.launch
C++/myrrh/Python/pyitl.py
C++/myrrh/graphs/convert.bat
C++/myrrh/myrrh/application.h
C++/myrrh/myrrh/assert.h
C++/myrrh/myrrh/bit_set.h
C++/myrrh/myrrh/chain_iterator.h
C++/myrrh/myrrh/defs.h
C++/myrrh/myrrh/fpu.h
C++/myrrh/myrrh/math.h
C++/myrrh/myrrh/seqan_boost_range_adaptors.h
C++/myrrh/myrrh/serialisable.h
C++/myrrh/myrrh/suffix_tree.h
C++/myrrh/myrrh/suffix_tree_graph.h
C++/myrrh/myrrh/trie.h
C++/myrrh/myrrh/type_names.h
C++/myrrh/myrrh/types.h
C++/myrrh/myrrh/python/boost_range.h
C++/myrrh/myrrh/python/convert.h
C++/myrrh/myrrh/python/multi_array_to_numpy.h
C++/myrrh/myrrh/python/numpy.h
C++/myrrh/myrrh/python/numpy_converter.h
C++/myrrh/myrrh/python/pyitl.h
C++/myrrh/myrrh/python/pyitl_impl.h
C++/myrrh/myrrh/python/tuple.h
C++/myrrh/myrrh/python/seqan/container.h
C++/myrrh/myrrh/python/seqan/defs.h
C++/myrrh/myrrh/python/seqan/index.h
C++/myrrh/myrrh/python/seqan/iterator.h
C++/myrrh/myrrh/python/seqan/segment.h
C++/myrrh/myrrh/python/seqan/string.h
C++/myrrh/myrrh/serialize/multi_array.h
C++/myrrh/myrrh/serialize/optional.h
C++/myrrh/python_test/test_boost_range.py
C++/myrrh/python_test/test_man.py
C++/myrrh/python_test/test_numpy_converter.py
C++/myrrh/python_test/test_pyitl.py
C++/myrrh/python_test/test_seqan.py
C++/myrrh/src/application.cpp
C++/myrrh/src/python/man_module.cpp
C++/myrrh/src/python/multi_array_to_numpy.cpp
C++/myrrh/src/python/pyitl_module.cpp
C++/myrrh/src/python/seqan_module.cpp
C++/myrrh/src/sandbox/itl_cardinality.cpp
C++/myrrh/src/sandbox/itl_intersection.cpp
C++/myrrh/src/sandbox/seqan_test.cpp
C++/myrrh/test/test_bit_set.cpp
C++/myrrh/test/test_chain_iterator.cpp
C++/myrrh/test/test_python_boost_range.cpp
C++/myrrh/test/test_python_numpy_converter.cpp
C++/myrrh/test/test_seqan_adaptors.cpp
C++/myrrh/test/test_suffix_tree.cpp
C++/myrrh/test/test_trie.cpp
C++/myrrh/test/test_type_names.cpp
cookbook/__init__.py
cookbook/cache_decorator.py
cookbook/dicts.py
cookbook/pylab_utils.py
docs/Makefile
docs/source/chow_liu_trees.rst
docs/source/conf.py
docs/source/index.rst
docs/source/installation.rst
docs/source/pybool.rst
docs/source/_templates/layout.html
etc/bgl-python-rev-338-patch.diff
etc/make_distribution
etc/update_dist
pybool/__init__.py
pybool/analysis.py
pybool/chow_liu_trees.py
pybool/constraints.py
pybool/io.py
pybool/network.py
pybool.egg-info/PKG-INFO
pybool.egg-info/SOURCES.txt
pybool.egg-info/dependency_links.txt
pybool.egg-info/top_level.txt
pybool/examples/__init__.py
pybool/examples/tutorial.py
scripts/examine_profile.py
scripts/pybool_run_constraints.py
tex/bibliography.bib
tex/pybool-tutorial.pdf
tex/pybool-tutorial.tex
tex/test.tex
tex/Figures/figures.tex
tex/Figures/make-figs.sh
tex/Figures/net-001.tex
tex/Figures/net-consistent.tex
tex/Figures/net-realisations-001.eps
tex/Figures/net-restrictions.tex